1.A primary structure is presented for mitochondrial aspartate aminotransferase from pig heart based on previously published results [Barra et al. (1977) FEBS Lett. 83, 241 -244; ( 1 979 3. Hydrophobic chromatography of the isozymes using alkyl agaroses suggests that the cytosolic but not the mitochondrial isozyme has a hydrophobic patch or pocket capable of binding to the alkyl side chains of the affinity medium.4. Evidence is presented to show that the cytosolic isozyme contains some basic amino acids whose ionizations are not expressed under native conditions. The mitochondrial isozyme does not show this effect.5. Predictions of the secondary structures of the isozymes are presented based on four predictive models. Minimum predictions are derived on the basis of agreement of three out of four of the individual predictions. These agregate predictions underestimate the amount of ordered secondary structure in both isozymes and suggest a relatively low degree of similarity between the isozymes. Individual predictive models, on the other hand, reveal greater similarities in secondary structures between the two isozymes.Aspartate aminotransferase, in common with a small number of other enzymes, exists in two distinct molecular forms one associated with the cell cytosol and the other with the mitochondria [l-31. These two isozymes differ in chemical and physical properties (for a review, see [4]) and indeed it is now known that, in humans, they are coded by genes on different chromosomes (I. Craig, quoted in [5]). Some time ago we [6] and another group [7] reported the complete primary structure of the cytosolic isozyme from pig heart and it seemed logical to extend these investigations to the corresponding mitochondrial form in order to provide a basis for understanding the comparative enzymology, evolutionary history and compartmen-