2009
DOI: 10.1016/j.bcp.2009.01.013
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Identification of transmembrane domain 6 & 7 residues that contribute to the binding pocket of the urotensin II receptor

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Cited by 11 publications
(15 citation statements)
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References 35 publications
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“…Transmembrane domain VI and transmembrane domain VII are also both involved in the formation of the binding pocket, with the residue W278 (6.54) serving as a focal point of interaction. In summary, the UT receptor appears to be quite similar to previously described class A GPCRs (49). The information that is known to date about the structure of UT is rather piecemeal.…”
Section: Uii-ut Interactionsupporting
confidence: 66%
“…Transmembrane domain VI and transmembrane domain VII are also both involved in the formation of the binding pocket, with the residue W278 (6.54) serving as a focal point of interaction. In summary, the UT receptor appears to be quite similar to previously described class A GPCRs (49). The information that is known to date about the structure of UT is rather piecemeal.…”
Section: Uii-ut Interactionsupporting
confidence: 66%
“…Out of the top five models predicted by I-TASSER, we selected the model that was the most appropriate to allow the insertion of UII in the rUT receptor binding pocket (model 1, C-score = 0.24). Previous modeling done by us was used as the basis for the initial UII peptide orientation within the binding pocket [34,42]. The GROMACS software suite [43] was used with the OPLS/AA forcefield [44][45][46] and GBSA implicit solvent model [47] to perform potential energy minimization and a molecular dynamic simulation of the UII/rUT receptor complex.…”
Section: Molecular Modelingmentioning
confidence: 99%
“…Two criteria are used to determine whether engineered cysteines are positioned at the surface of the bindingsite pocket: (i) the reaction with the MTSEA reagent alters binding irreversibly and (ii) the reaction is retarded by the presence of the ligand. This approach has been used by us and others to identify residues that line the surface of GPCR binding-site pockets [29][30][31][32][33][34][35][36][37]. Indeed, using SCAM analysis, we have previously identified eleven MTSEA-sensitive residues in TM3, TM4, TM5, TM6 and TM7 of the rat UT receptor (rUT receptor) [34,36] that make up that receptor's binding pocket.…”
Section: Introductionmentioning
confidence: 99%
See 1 more Smart Citation
“…This contact may participate to the primary recognition process of UT by UII and thus to the selectivity of the ligand, or it may constitute an allosteric site of interaction. By using the substituted-cysteine accessibility method (Javitch et al, 2002), it was recently demonstrated that several TMD3, TMD4, TMD5, TMD6, and TMD7 residues of rat UT participate to the formation of the receptor binding pocket (Holleran et al, 2009;Sainsily et al, 2013). However, there are still numerous unsolved questions regarding the molecular interactions between UT and its natural ligands.…”
mentioning
confidence: 99%