| INTRODUC TI ONWhen deciding whether to use computational models to study transplant immunology mechanisms, researchers are faced with two main questions: (a) what are computational models useful for? and (b) should I build my own model or use one that already exists and adapt it? This review aims to provide answers to these questions by explaining the strengths of the use of computational models, reviewing examples of how the use of computational models has successfully furthered our understanding of alloimmune responses, and presenting the advantages of reusing of publicly available immune mechanistic computational models to study key questions immune questions in transplant.
| S TRENG TH S OF MECHANIS TI C COMPUTATIONAL MODEL SComputational models are mathematical descriptions of biological processes that are useful tools (a) to summarize knowledge in quantitative terms, (b) to provide mechanistic understanding of biological processes, and (c) to generate new hypotheses. 1-3
| To summarize knowledge in quantitative termsBuilding computational models is indeed not conceptually different from performing a literature search of the biological system under study (eg, immune system, lungs, and cells) and constructing a diagram with all the relevant players (eg, cell types and molecular entities) and processes (eg chemical reactions, cell-to-cell interactions) that influence its response or behavior. Creating this type of diagram or working model is a task commonly used by most researchers to help guide the design of experiments. However, some key biological features are Computational mechanistic models constitute powerful tools for summarizing our knowledge in quantitative terms, providing mechanistic understanding, and generating new hypotheses. The present review emphasizes the advantages of reusing publicly available computational models as a way to capitalize on existing knowledge, reduce the number of parameters that need to be adjusted to experimental data, and facilitate hypothesis generation. Finally, it includes a step-by-step example of the reuse and adaptation of an existing model of immune responses to tuberculosis, tumor growth, and blood pathogens, to study donor-specific antibody (DSA) responses. This review aims to illustrate the benefit of leveraging the currently available computational models in immunology to accelerate the study of alloimmune responses, and to encourage modelers to share their models to further advance our understanding of transplant immunology.
K E Y W O R D Salloantibody, alloantigen, basic (laboratory) research/science, cellular biology, immune regulation, immunobiology, molecular biology, signaling/signaling pathways, T cell biology, translational research/science