Clonal hematopoiesis (CH) is suggested as an important risk factor for all-cause mortality and multiple chronic diseases including hematological neoplasms, cardiovascular diseases, and potentially a spectrum of autoimmune or immune-deficiency diseases. Mutations in TET2 are one of the first identified, most important and prevalent genetic drivers of CH. However, cooperative factors and mechanisms underlying TET2-deficiency related CH (TedCH) remain largely unknown. Controversially, it is recently suggested that certain diseases take place prior to TedCH and promote TedCH on the contrary, indicating diseases in non-hematopoietic organs may act as environmental non-genetic drivers of CH. To clarify relationships between immune-dysfunctional diseases and CH, here we tested impact of various challenges on TedCH. We found that expedited TedCH depended on establishment of inflammatory environment. Primary or chimeric Tet2-mutant mice spontaneously developed co-symptoms reminiscent of human chronic colitis and myeloid leukemia, which was exacerbated by feeding with DSS, an experimental inducer of ulcerative colitis. Single cell RNA-seq (scRNA-seq) analysis reveals in depth the damage of colon and bone marrow in the Tet2-mutant mice in physiological condition or fed with DSS, along with increase of dysbacteriosis indicated by gut microbiome analysis. Results from colon scRNA-seq from both mouse and human highlight important roles of PTX3/IL-1β pro-inflammatory signaling in promoting colitis or leukemia. Finally, TedCH trajectory and inflammation in colon and bone marrow was ameliorated by treatment of IL-1R1 inhibitor Anakinra. Our study suggests that PTX3/IL-1β signaling and clonal hematopoiesis cooperates and plays important roles in gut-bone marrow axis and related diseases including colitis and leukemia.