Patients with systemic sclerosis (SSc) have some musculoskeletal manifestations. The radiologic manifestations can be articular or non-articular. There is inconsistency in the correlation between clinical manifestations and radiologic changes; there are few reports on the correlation between them and capillaroscopy. A total of 81 patients with SSc who referred to a scleroderma clinic affiliated with Shiraz University of Medical Sciences, Iran, were evaluated in this cross-sectional, single-center study. Skin score test and capillaroscopy were performed, and an expert radiologist evaluated the posterior-anterior views of both hands and wrists. Data was analyzed using SPSS version 19. The participants consisted of 73 women and eight men aged 42 ± 2.6 years old, 60.5% of whom had limited scleroderma (lcSSc) and 39.5% had diffuse scleroderma (dcSSc). After 5 years, 91% of them had some radiologic changes, most of which were asymptomatic. The most common radiologic changes were non-articular (70.1%), including acro-osteolysis, subcutaneous and peri-articular calcinosis, and avascular necrosis. Flexion deformities and DIP joint space narrowing were seen more in patients with dcSSc. Resorption of the distal ulna and avascular necrosis was observed more in lcSSc. There was a correlation between radiologic changes and duration, but not with skin score. The most common capillaroscopic pattern in patients with radiologic change was late scleroderma pattern. Radiologic changes, which were mostly asymptomatic, were common in patients with SSc. The changes were different in patients with dcSSc and lcSSc and there were associations with duration and capillaroscopic patterns, but not with skin score.