2019
DOI: 10.21769/bioprotoc.3264
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Imaging Gene Expression Dynamics in Pseudomonas fluorescens In5 during Interactions with the Fungus Fusarium graminearum PH-1

Abstract: Genomics, transcriptomics and metabolomics are powerful technologies for studying microbial interactions. The main drawback of these methods is the requirement for destructive sampling. We have established an alternative but complementary technique based on a microplate system combined with promoter fusions for visualizing gene expression in space and time. Here we provide a protocol for measuring spatial and temporal gene expression of a bacterial reporter strain interacting with a fungus on a solid surface.

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“…Recordings was made through the bottom of the plate and a lid was kept on to avoid drying of the plate. The plate reader was set up to produce one big image for the whole plate that could be exported as a TEXT image and imported into the freeware ImageJ to produce a TIFF Z-stack that can be measured for the fluorescence development over time in any defined area (Hennessy et al ., 2017, 2019). The fluorescence increase from the hyphae of each agar plug could then be analyzed and compared.…”
Section: Methodsmentioning
confidence: 99%
“…Recordings was made through the bottom of the plate and a lid was kept on to avoid drying of the plate. The plate reader was set up to produce one big image for the whole plate that could be exported as a TEXT image and imported into the freeware ImageJ to produce a TIFF Z-stack that can be measured for the fluorescence development over time in any defined area (Hennessy et al ., 2017, 2019). The fluorescence increase from the hyphae of each agar plug could then be analyzed and compared.…”
Section: Methodsmentioning
confidence: 99%