The present study describes and validates a novel yet simple system for simultaneous in vivo measurements of rates of aquatic CO 2 production (Ṁ CO2 ) and oxygen consumption (Ṁ O2 ), thus allowing the calculation of respiratory exchange ratios (RER). Diffusion of CO 2 from the aquatic phase into a gas phase, across a hollow fibre membrane, enabled aquatic Ṁ CO2 measurements with a highprecision infrared gas CO 2 analyser. Ṁ O2 was measured with a P O2 optode using a stop-flow approach. Injections of known amounts of CO 2 into the apparatus yielded accurate and highly reproducible measurements of CO 2 content (R 2 =0.997, P<0.001). The viability of in vivo measurements was demonstrated on aquatic dragonfly nymphs (Aeshnidae; wet mass 2.17 mg-1.46 g, n=15) and the apparatus produced precise Ṁ CO2 (R 2 =0.967, P<0.001) and Ṁ O2 (R 2 =0.957, P<0.001) measurements; average RER was 0.73± 0.06. The described system is scalable, offering great potential for the study of a wide range of aquatic species, including fish.