The composition of the mammalian gut microbiota can be influenced by a multitude
of environmental variables such as diet and infections. Studies investigating
the effect of these variables on gut microbiota composition often sample across
multiple separate populations and habitat types. In this study we explore how
variation in the gut microbiota of the house mouse (Mus musculus
domesticus) on the Isle of May, a small island off the east coast
of Scotland, is associated with environmental and biological factors. Our study
focuses on the effects of environmental variables, specifically trapping
location and surrounding vegetation, as well as the host variables sex, age,
body weight and endoparasite infection, on the gut microbiota composition across
a fine spatial scale in a freely interbreeding population. We found that
differences in gut microbiota composition were significantly associated with the
trapping location of the host, even across this small spatial scale. Sex of the
host showed a weak association with microbiota composition. Whilst sex and
location could be identified as playing an important role in the compositional
variation of the gut microbiota, 75% of the variation remains unexplained.
Whereas other rodent studies have found associations between gut microbiota
composition and age of the host or parasite infections, the present study could
not clearly establish these associations. We conclude that fine spatial scales
are important when considering gut microbiota composition and investigating
differences among individuals.