To clarify heterogeneity in Japanese adult-onset type 1 diabetes, we analyzed the HLA-DR and -DQ haplotypes, depending on the clinical phenotype, and compared them with those in childhood-onset type 1 diabetes (CO). The patients in a previously reported Ehime Study were divided into subgroups by the mode of onset of diabetes: 68 acute-onset type 1 diabetic patients (AO) and 28 slowly progressive type 1 diabetic patients (SO). HLA haplotypes were compared with those of 80 CO patients and 190 control subjects. Two major susceptible HLA haplotypes in the Japanese, DRB1*0405-DQB1*0401 (DR4) and DRB1*0901-DQB1*0303 (DR9), were significantly increased in the AO and CO groups, but only DR9 was increased in the SO group. AO subjects had a higher frequency of DR9 than CO subjects. Accordingly, the DR9:DR4 frequency increased with increasing age of onset. Another susceptible haplotype, DRB1*0802-DQB1*0302 (DR8), was involved only in the CO group. Analysis of haplotype combinations revealed that DR4 and DR9 had significant dosage effects on the AO and CO groups (P < 0.0001), but only DR9 had such an effect in the SO group (P < 0.03). These results suggest differences in the contribution of HLA class II haplotypes to susceptibility of type 1 diabetes depending on the clinical phenotype and also indicate that HLA class II haplotypes may be associated with the onset age of type 1 diabetes. Diabetes 53: 2684 -2690, 2004 T ype 1 diabetes is the result of a destruction of pancreatic -cells and leads to complete insulin deficiency (1,2). Although type 1 diabetes is frequently considered to be a childhood disease and is characterized by a rapid progression to insulin dependency, the clinical onset of type 1 diabetes is not confined to children. Epidemiological data suggest that 30 -50% of type 1 diabetic patients may develop clinical signs of diabetes after age 20 years (3,4). Moreover, there is increasing evidence to indicate that type 1 diabetes, especially when developed in adulthood, is clinically and immunologically heterogeneous. Insulin secretion abruptly ceases in fulminant type 1 diabetes (5), whereas pancreatic -cell function can be preserved for over a decade in some patients, a condition that is referred to as slowly progressive insulin-dependent diabetes (6) or latent autoimmune diabetes in adults (LADA) (7). Compared with our extensive knowledge of the epidemiological, clinical, and genetic characteristics of childhood-onset type 1 diabetes, our understanding of adult-onset type 1 diabetes is incomplete.Susceptibility to type 1 diabetes is determined by both environmental and genetic factors. Although multiple genes have been implicated, HLA class II genes, especially the HLA-DR and -DQ genes, are most important and are estimated to account for ϳ50% of the susceptibility to the disease (8). These HLA associations vary depending on geographic and ethnic origin (9). It has been shown that Japanese type 1 diabetic patients have different HLA associations than Caucasian patients. In Caucasian populations, the DRB1*...