We have previously reported the high levels of glutamic acid decarboxylase 65 autoantibodies (GAD65A) in patients with type 1 diabetes and autoimmune thyroid disease. Here we describe a 32-year-old Japanese female with a thirteen-year history of type 1 diabetes whose levels of GAD65A were elevated just after the emergence of anti-thyroid autoimmunity. At 19 years of age, she developed diabetic ketoacidosis and was diagnosed with type 1 diabetes. She had GAD65A, insulinoma-associated antigen-2 autoantibodies (IA-2A), and zinc transporter-8 autoantibodies (ZnT8A), but was negative for antibodies to thyroid peroxidase (TPOAb) and thyroglobulin (TGAb) at disease onset. ZnT8A and IA-2A turned negative 2-3 years after the onset, whereas GAD65A were persistently positive at lower level (approximately 40 U/mL). However, just after the emergence of TGAb at disease duration of 12.5 years, GAD65A levels were reelevated up to 5717 U/mL in the absence of ZnT8A and IA-2A. Her thyroid function was normal and TPOAb were consistently negative. She has a HLA-DRB1*03:01/*04:01-DQB1*02:01/*03:02 genotype. Persistent positivity for GAD65A might be associated with increased risk to develop anti-thyroid autoimmunity.© 2013 Baishideng. All rights reserved.Key words: Autoimmune thyroid disease; Case report; Glutamic acid decarboxylase autoantibodies; Type 1 diabetes Core tip: This paper describes a case of type 1 diabetes whose levels of glutamic acid decarboxylase 65 autoantibodies (GAD65A) were reelevated just after the emergence of anti-thyroid autoimmunity at disease duration of 12.5 years without any clinical signs of thyroid dysfunction. This case report suggests that persistent positivity for GAD65A is associated with increased risk to develop anti-thyroid autoimmunity.