Phagocytosis serves as one of the key processes involved in development, maintenance of tissue homeostasis, as well as in eliminating pathogens from an organism. Under normal physiological conditions, dying cells (e.g., apoptotic and necrotic cells) and pathogens (e.g., bacteria and fungi) are rapidly detected and removed by professional phagocytes such as macrophages and dendritic cells (DCs). In most cases, specific receptors and opsonins are used by phagocytes to recognize and bind their target cells, which can trigger the intracellular signalling events required for phagocytosis. Depending on the type of target cell, phagocytes may also release both immunomodulatory molecules and growth factors to orchestrate a subsequent immune response and wound healing process. In recent years, evidence is growing that opsonins and receptors involved in the removal of pathogens can also aid the disposal of dying cells at all stages of cell death, in particular plasma membrane-damaged cells such as late apoptotic and necrotic cells. This review provides an overview of the molecular mechanisms and the immunological outcomes of late apoptotic/necrotic cell removal and highlights the striking similarities between late apoptotic/necrotic cell and pathogen clearance. The immune system is constantly under pressure to accurately distinguish foreign materials or pathogens (non-self) from normal healthy tissues (self), and make an appropriate immune response to non-self molecules through a range of effector mechanisms. It is equally important for the immune system to distinguish healthy viable cells (self) from dying cells (altered-self) during the course of tissue remodelling or tissue injury to prevent the release of intracellular molecules that may damage neighbouring cells or stimulate an immunogenic response against self (i.e., an autoimmune response). Professional phagocytes of the innate immune system use a broad range of germline-encoded receptors and opsonins to discriminate viable cells from pathogens and dying cells, and aid the removal of non-self and altered-self through phagocytosis.1,2 Not surprisingly, impairment of phagocytosis due to a deficiency in key phagocytic components such as C1q, one of the first components of the classical complement cascade, has been implicated in an increased susceptibility to bacterial infection 3 as well as in the development of autoimmune diseases such as systemic lupus erythematosus (SLE).4 Therefore, understanding the molecular mechanisms of phagocytosis will provide new insights into numerous physiological and pathological processes.Under normal physiological conditions, cells of a multicellular organism predominantly die through the well-defined process known as apoptosis or programmed cell death (see Elmore 5 for an extensive review). During different stages of apoptotic cell death, a precise set of morphological and These authors contributed equally to this work.