24Hearing loss is a problem that impacts a significant proportion of the adult population. Cochlear 25 hair cell loss due to loud noise, chemotherapy and aging is the major underlying cause. A 26 significant proportion of these individuals are dissatisfied with available treatment options which 27 include hearing aids and cochlear implants. An alternative approach to restore hearing would be 28 to regenerate hair cells. Such therapy would require recapitulation of the complex architecture of 29 the organ of Corti, necessitating regeneration of both mature hair cells and supporting cells.
30Transcriptional profiles of the mature cell types in the cochlea are necessary to can provide a metric 31 for eventual regeneration therapies. To assist in this effort, we sought to provide the first single-32 cell characterization of the adult cochlear supporting cell transcriptome. We performed single-cell 33 RNA-Seq on FACS-purified adult cochlear supporting cells from the Lfng EGFP adult mouse, in 34 which supporting cells express GFP. We demonstrate that adult cochlear supporting cells are 35 transcriptionally distinct from their perinatal counterparts. We establish cell type-specific adult 36 cochlear supporting cell transcriptome profiles, and we validate these expression profiles through 37 a combination of both fluorescent immunohistochemistry and in situ hybridization co-localization 38 and qPCR of adult cochlear supporting cells. Furthermore, we demonstrate the relevance of these 39 profiles to the adult human cochlea through immunofluorescent human temporal bone 40 histopathology. Finally, we demonstrate cell cycle regulator expression in adult supporting cells 41 and perform pathway analyses to identify potential mechanisms for facilitating mitotic 42 regeneration (cell proliferation, differentiation, and eventually regeneration) in the adult 43 mammalian cochlea. Our findings demonstrate the importance of characterizing mature as opposed 44 to perinatal supporting cells. 45 46 81 combination of fluorescent immunohistochemistry and in situ hybridization co-localization in 82 adult cochlear cross-sections and qPCR from isolated adult cochlear supporting cells. To 83 examine the relevance of these pathways for potential clinical applications, we demonstrate 84 expression of several novel, cell-type specific markers using immunofluorescence on human 85 temporal bones. Finally, we perform cell cycle pathway analyses on FACS-purified single adult 86 supporting cell transcriptomes to explore potential mechanisms to overcome adult supporting 87 cell quiescence.88 89 90 91 METHODS 92 93 Page 3 of 32 EXPERIMENTAL MODEL AND SUBJECT DETAILS 94 METHOD DETAILS 95 Mice 96 CD-1 mice were obtained from Charles River Laboratories. CBA/J mice were obtained from 97 Jackson Laboratories. The Tg(Lfng-EGFP)HM340Gsat BAC transgenic mouse line (Lfng EGFP ) 98 was generated by the GENSAT Project (Gong et al. 2003) and was kindly provided by A. 99 Doetzlhofer (Johns Hopkins University). P60 and P120 mice of either sex were used for all 100 ...