To identify new markers of minimal residual disease (MRD) in B-lineage acute lymphoblastic leukemia (ALL), gene expression of leukemic cells obtained from 4 patients with newly diagnosed ALL was compared with that of normal CD19 ؉ CD10 ؉ B-cell progenitors obtained from 2 healthy donors. By cDNA array analysis, 334 of 4132 genes studied were expressed 1.5-to 5.8-fold higher in leukemic cells relative to both normal samples; 238 of these genes were also overexpressed in the leukemic cell line RS4;11. Nine genes were selected among the 274 overexpressed in at least 2 leukemic samples, and expression of the encoded proteins was measured by flow cytometry. Two proteins (caldesmon and myeloid nuclear differentiation antigen) were only weakly expressed in leukemic cells despite strong hybridization signals in the array. By contrast, 7 proteins (CD58, creatine kinase B, ninjurin1, Ref1, calpastatin, HDJ-2, and annexin VI) were expressed in B-lineage ALL cells at higher levels than in normal CD19 ؉ CD10 ؉ B-cell progenitors (P < .05 in all comparisons).
IntroductionIn B-lineage acute lymphoblastic leukemia (ALL), the most common form of leukemia in children, the level of minimal (ie, submicroscopic) residual disease (MRD) during clinical remission is one of the most powerful prognostic indicators. 1 Correlative studies have demonstrated that detection of MRD by flow cytometric or polymerase chain reaction (PCR) analysis of leukemiaspecific markers is strongly associated with subsequent relapse. 2-10 Therefore, MRD assays are being introduced into treatment protocols as a tool to gauge treatment response and aid in the selection of therapeutic strategies.The greatest remaining obstacle to the routine use of MRD studies in ALL therapy protocols is that none of the techniques currently available for MRD detection can be applied to all patients. PCR amplification of chromosomal breakpoints can be applied to fewer than half of all children with ALL, that is, those whose leukemic cells express nonrandom genetic abnormalities. 11 The success rate of PCR analysis of antigen-receptor genes ranges from 80% to 90% because of lack of sufficiently specific leukemia sequences, oligoclonality, and clonal evolution. [12][13][14][15] This method is also laborious and can be performed only in a few specialized centers. Flow cytometry is widely used for the diagnosis and classification of leukemia but can monitor MRD in only 80% to 85% of cases of B-lineage ALL because of lack of leukemiaspecific immunophenotypes. 16 Moreover, MRD studies by this technique require extensive panels of complex antibody combinations to distinguish leukemic lymphoblasts from their normal counterparts, the B-lymphoid progenitors of the bone marrow, and to prevent false-negative findings due to immunophenotypic changes during the course of the disease. 16 Thus, the identification of new leukemia markers that are easily detectable and are stably expressed in a large proportion of B-lineage cases would greatly simplify the application of MRD studies and help...