Present-day species distribution and patterns of genetic diversity in Europe are a result of post-glacial re-colonization from glacial refugia after the Last Glacial Maximum. This process led to the formation of secondary contact zones (suture zones) between the haplogroups of different species, and were induced by several factors, including climate and evolutionary processes like selection and adaptation. One such suture zone has been found in Poland, where a complex network of different phylogenetic lineages of predators, ungulates, and rodents is present. The phylogeography of mammals in western Europe has been widely studied, but central and eastern Europe have been treated cursorily. Only a few samples from these areas were analyzed in previous studies, resulting in a simplified and false description of local genetic structure. In this review, results of previous phylogeographic studies on carnivore, ungulate, and rodent species from central and eastern Europe were collected and synthesized to verify the Polish suture zone hypothesis and examine how it is affected by different variables (geomorphological features like the Carpathian Mountains and Vistula River, climate, or anthropogenic factors). Our data reflects the importance of precise studies in this region and the value they contribute to further studies of large-scale European phylogeography.