“…The mutation and recombination rates and frequencies, the virion production rate, and a short generation time all contribute to HIV-1 exhibiting quasispecies dynamics (references 145,369,385,407,478,511,552,588,589,639,655,674,675,735,800,804,844, and 852, among numerous other studies). The interpretation of the origin of HIV-1 heterogeneity and diversification of viral sequences is complicated by the compartmentalization of the infection, the presence of viral reservoirs (and therefore replicative and nonreplicative quasispecies memory), and reactivation of latent provirus (85,110,127,176,296,390,458,488,706,835,872). Retroviral sequences integrated into cellular DNA will be subjected to the relative evolutionary stasis typical of cellular genes (except in the case of potential integration at sites undergoing cellular hypermutational events).…”