Mutations in the human fibrillin 1 gene (FBN1) cause the Marfan syndrome (MFS), an autosomal dominant connective tissue disorder. Knowledge about FBN1 mutations is important for early diagnosis, management, and genetic counseling. However, mutation detection in FBN1 is a challenge because the gene is very large in size (~200 kb) and the ~350 mutations detected so far are scattered over 65 exons. Conventional methods for large-scale detection of mutations are expensive, technically demanding, or time consuming. Recently, a high-capacity low-cost mutation detection method was introduced based on denaturing high-performance liquid chromatography (DHPLC). To assess the sensitivity and specificity of this method, we blindly screened 64 DNA samples of known FBN1 genotype exon-by-exon using exon-specific DHPLC conditions. Analysis of 682 PCR amplicons correctly identified 62 out of 64 known sequence variants. In three MFS patients of unknown FBN1 genotype, we detected two mutations and eight polymorphisms. Overall, 20 mutations and two polymorphisms are described here for the first time. Our results demonstrate 1) that DHPLC is a highly sensitive (8999%, P = 0.05) method for FBN1 mutation detection; but 2) that chromatograms with moderate and weak pattern abnormalities also show false positive signals (in all 4559%, P = 0.05); 3) that the difference in the chromatograms of heterozygous and homozygous amplicons is mostly independent of the type of sequence change; and 4) that DHPLC column conditions, additional base changes, and the amounts of injected PCR products influence significantly the shape of chromatograms. A strategy for FBN1 mutation screening is discussed. [Dietz et al., 1991]. The autosomal dominant MFS affects ∼1:10,000 individuals, without gender or ethnic predisposition [Gray et al., 1994;Pyeritz, 2000]. The disease is characterized by skeletal, ocular, and cardiovascular manifestations and exhibits a broad range of severity [Pyeritz, 2000]. Aortic aneurysms and dissections are the life-threatening events that can be prevented by timely cardiovascular surgery [Finkbohner et al., 1995]. So far, the diagnosis of MFS has been made clinically. Recently, however, the inclusion of FBN1 mutations as a diagnostic criterion has been proposed [De Paepe et al., 1996;Maron et al., 1998]. Molecular analysis of FBN1 would be valuable for presymptomatic diagnosis and genetic counseling as well as for a better understanding of the phenotypic variability of MFS and related disorders .The FBN1 gene, located on chromosome 15q21, is about 200 kb in size and contains 65 exons encoding 2,871 amino acids and four additional alternatively spliced exons at the 5′ end of the gene [Kainulainen et al., 1990;Pereira et al., 1993;Biery et al., 1999]. The ∼350 FBN1 mutations reported so far (Marfan Database; personal communication with G. Beroud and C. Boileau) are scattered over all 65 exons and are largely unique to each affected family (http:// archive.uwcm.ac.uk/uwcm/mg/search/127115. html) . Furthermore, clear genotypephenotype ...