In this study, we examined the effects of physicochemical variability on the microbial communities of vernal pools. Denaturing gradient gel electrophoresis revealed temporal changes to be more pronounced than spatial changes in eukaryotic and bacterial communities. Sequencing revealed high degrees of richness in decomposers, which supports the notion that vernal pools are heterotrophic habitats.Vernal pools are seasonally flooded ecosystems that are subject to variability in abiotic conditions (8). Although previous studies have documented the importance of abiotic conditions for vernal-pool macroorganisms (3,9,10,12,18,20), little is known about abiotic influences on microorganisms. Given the abundance of vernal pools in the landscape (e.g., reference 5) and their highly variable physicochemical natures (2,4,6,17,19), vernal pools can serve as a model system to explore abiotic influences on microbial communities. Further, while the diversity of vernal-pool macroorganisms has been welldocumented, comparable studies of microbial biodiversity are rare (see reference 8 for a review). In one survey of a single snowmelt pool, 76% of the identified biota were protists or bacteria (15), which suggests that these organisms dominate temporary water bodies in terms of both species richness and abundance (8). The main objective of this study was to characterize the microbial (eukaryotic and bacterial) communities of vernal pools in northeastern Ohio and to illustrate any spatial and temporal variations in these communities in relation to abiotic factors.This study was conducted at Case Western Reserve University's Squire Valleevue and Valley Ridge Farms (41°29Ј53ЉN, 81°25Ј27ЉW; elevation, 320 m), where five vernal pools (one man-made pool, called the salamander pond, and four natural pools), which ranged in size from 16 to 20 m 2 , were studied. The pools were located within an 80-year-old secondarygrowth forest, which is characterized by well-drained, silt loam soils and a canopy dominated by Acer saccharum and Fagus grandifolia. From each pool, overlying water, organic detritus (i.e., leaf matter), and soil were collected on 1 April, 4 May, and 2 June 2004. These three collection times were shortly after snow melting and prior to the drying of the pools. Three replicate samples (of each sample type) were collected from the shore of each pool and combined. Specifically, soil samples were cores collected with sterile 1-ml pipette tips, and water samples were collected with 0.2-m-pore-size polycarbonate filters through which 50 ml of water was filtered. At the time of sampling, dissolved oxygen concentrations, pHs, average depths, and terrestrial light levels were measured in situ. Relative conductivities of water samples were determined in the lab.Community profile analysis was carried out by PCR-denaturing gradient gel electrophoresis (DGGE). DGGE was performed first to compare a subset of pool samples (three pool samples from three different sampling dates) of each individual sample type (water, soil, and organic detritu...