Tropical peatlands release significant quantities of greenhouse gases to the atmosphere, yet the relative contributions of heterotrophic and autotrophic respiration to net CO 2 fluxes remains sparsely quantified. We used a combination of in situ trenching and vegetation removal in ex situ pots to quantify rootderived CO 2 under two plant functional types within a mixed species forest. Trenching significantly reduced surface CO 2 flux, indicating that approximately twothirds of the released CO 2 was derived from roots. In contrast, ex situ vegetation removal in pots indicated that root-derived CO 2 accounted for 27% of the total CO 2 flux for Campnosperma panamensis, a broadleaved evergreen tree, and 49% for Raphia taedigera, a canopy palm. The results show that root-derived CO 2 is a major contribution to net CO 2 emissions in tropical peatlands, and that the magnitude of the emissions is affected by plant species composition. This is important in the context of land use change driving alterations in vegetation cover.