Two approaches, based on Generalized Retrieval of Aerosol and Surface Properties (GRASP) and Modern-Era Retrospective Analysis for Research and Applications version 2 (MERRA-2) models, are investigated for reproducing aerosol layers in the troposphere. The GRASP algorithm is supplied with synergistic LIDAR and sunphotometer measurements to obtain aerosol extinction profiles. MERRA-2 is an atmospheric reanalysis coupling model that includes an external mixture of sea salt, dust, organic carbon, black carbon, and sulfate aerosols. A data set from Racibórz observatory, obtained with LIDAR and a sunphotometer in the 2017–2020 period, is analysed with GRASP along with the closest grid point data given by MERRA-2. The models demonstrate satisfactory agreement, yet some discrepancies were observed, indicating the presence of biases. For vertically integrated profiles, the correlation coefficient (R) between aerosol optical thickness was calculated to be 0.84, indicating a strong linear relationship. The Pearson correlation coefficient calculated between profiles for the selected altitude sectors varies between 0.428 and 0.824, indicating moderate to good agreement at all altitudes. GRASP shows denser aerosol layers in the mid-troposphere, while MERRA-2 gives higher aerosol extinctions throughout the high troposphere to low stratosphere region. Moreover, GRASP does not provide vertical variability in the extinction profile near the ground, due to a lack of data in the LIDAR’s incomplete overlap range. Lastly, the aerosol layer identification and type recognition are validated with statistical analysis of air mass backward trajectories with endpoints spatially and temporally collocated with individual identified layers. These reveal potential source regions that are located within areas known to be significant sources for the different identified aerosol types.