Dissemination
of antibiotic resistance genes (ARGs) in urban water
bodies has become a significant environmental and health concern.
Many approaches based on real-time quantitative PCR (qPCR) have been
developed to offer rapid and highly specific detection of ARGs in
water environments, but the complicated and time-consuming procedures
have hindered their widespread use. Herein, we developed a facile
one-step approach for rapid detection of ARGs by leveraging the trans-cleavage activity of Cas12a and recombinase polymerase
amplification (RPA). This efficient method matches the sensitivity
and specificity of qPCR and requires no complex equipment. The results
show a strong correlation between the prevalence of four ARG markers
(ARGs: sul1, qnrA-1, mcr-1, and class 1 integrons: intl1) in tap water, human
urine, farm wastewater, hospital wastewater, municipal wastewater
treatment plants (WWTPs), and proximate natural aquatic ecosystems,
indicating the circulation of ARGs within the urban water cycle. Through
monitoring the ARG markers in 18 WWTPs in 9 cities across China during
both peak and declining stages of the COVID epidemic, we found an
increased detection frequency of mcr-1 and qnrA-1 in wastewater during peak periods. The ARG detection
method developed in this work may offer a useful tool for promoting
a sustainable urban water cycle.