Rainfall can affect influent flow rate and compositions of wastewater, and thus further affect wastewater treatment performance and the effluent quality. This study aims to study the influence of rainfall on the environmental impacts of centralized wastewater treatment plants. The correlations between rainfall, and influent flow rate and compositions of wastewater in wet and dry seasons with two sewer systems, i.e. combined and separate sewer systems, were primarily established. Environmental impacts were assessed with life cycle assessment (LCA) to understand the temporal environmental burdens in wet and dry seasons. Functional units as per m 3 treated wastewater (FU1) and as per kg PO 4 3 -eq. removed (FU2), respectively, were used to evaluate impacts of wastewater treatment to the environment. Strong correlation between rainfall and the influent flow rate was found in the wastewater treatment plants with either a combined sewer system (with Pearson correlation coefficient r at 0.66) or a separate sewer system (with r at 0.84), where r represents the strength of the association between two variables. The rainfall effect is more obvious on the eutrophication potential and global warming potential than on other environmental indicators while sewer system, i.e. combined or separate, seems not important in the two cases studied. Both wastewater treatment plants (WWTPs) show a lower environmental burden in the wet season than in the dry season partially due to the dilution of wastewater by using FU1. The WWTP receiving high strength wastewater, however, demonstrates higher environmental impacts in the wet season by using FU2 than FU1, due to the less efficient treatment caused by heavy rainfall. Meanwhile, it is found that environmental impacts from the WWTP receiving low strength wastewater have no difference when using either FU1 or FU2. The results indicate that the environmental burdens particularly eutrophication and global warming caused by WWTPs are dependent on the correlations of rainfall intensity with wastewater quantity and quality instead of combined or separate sewer system. This could be used to guide a stricter control of eutrophication in a more sensitive season in more vulnerable receiving waters.