The way the brain work and its principle of work has long been a big scientific question that scientists have dreamed of solving. However, as is known to all, the brain works at different levels, and the operation at different levels is interactional and mutually coupled. Unfortunately, until now, we still do not know how the nervous system at different levels is interacting and coupling with each other. This review provides some preliminary discussions on how to address these scientific questions, for which we propose a novel theory of the brain called neural energy. Such a theoretical and research approach can couple neural information with neural energy to address the interactions of the nervous system at various levels. Therefore, this review systematically summarizes the neural energy theories and methods proposed by our research in the field of brain science, as well as the internal relationship between mechanics and neural energy theory. Focuses on how to construct a Wang–Zhang (W–Z) neuron model equivalent to Hodgkin–Huxley (H–H) model by using the idea of analytical dynamics. Then, based on this model, we proposed a large-scale neural model and a theoretical framework of global neural coding of the brain in the field of neuroscience. It includes information processing of multiple sensory and perceptual nervous systems such as visual perception, neural mechanism of coupling between default mode network and functional network of brain, memory switching and brain state switching, brain navigation, prediction of new working mechanism of neurons, and interpretation of experimental phenomena that are difficult to be explained by neuroscience. It is proved that the new W–Z neuron model and neural energy theory have unique functions and advantages in neural modeling, neural information processing and methodology. The idea of large-scale neuroscience research with neural energy as the core will provide a potentially powerful research method for promoting the fusion of experimental neuroscience and theoretical neuroscience in the future, and propose a widely accepted brain theory system between experimental neuroscience and theoretical neuroscience. It is of great scientific significance to abandon the shortcomings of reductive and holism research methods in the field of neuroscience, and effectively integrate their respective advantages in methodology.