In Part I, five pre-existing sets of empirical data were used to propose the existence of a three dimensional geometry of negatively-charged tetra-oxysubhydride (TOSH) structures within the exclusion zones (EZs) of hydroxyl functional group anchored water, such as melting ice, rabbit muscle protein and polar solvent derived EZs adjacent to Nafion ® . In the current paper we propose that TOSH-loaded EZs play a critical role in at least three key significant biological areas: a) guarding complex biomolecules, such as DNA, RNA, cytochrome c oxidase, NADPH and proteins in water, from ultraviolet and oxygen-induced free radical damage; b) regenerating oxidized protein SH functional groups (e.g. membrane proteins); and c) in regenerating glutathione from glutathione disulphide. The absorbance of photonic energy is directly involved in generating and regenerating EZs, TOSH and the copper portions of cytochrome c oxidase. TOSH can prevent premature decay of cytochrome c oxidase which suggests a previously unknown symbiotic relationship between these two systems, given that cytochrome c oxidase deficiencies are implicated in improper glucose metabolism, membrane protein malfunction and the subsequent propagation of dementia including Alzheimer's disease.