2017
DOI: 10.1117/1.nph.5.1.011011
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Imperial College near infrared spectroscopy neuroimaging analysis framework

Abstract: Abstract. This paper describes the Imperial College near infrared spectroscopy neuroimaging analysis (ICNNA) software tool for functional near infrared spectroscopy neuroimaging data. ICNNA is a MATLAB-based objectoriented framework encompassing an application programming interface and a graphical user interface. ICNNA incorporates reconstruction based on the modified Beer-Lambert law and basic processing and data validation capabilities. Emphasis is placed on the full experiment rather than individual neuroim… Show more

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Cited by 9 publications
(6 citation statements)
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“…The modified Beer-Lambert law was used to convert changes in light intensity into HbO 2 and HHb concentration changes. 11 Data were then processed for statistical analysis using a bespoke analytical framework (ICNNA) 32 and self-paced blocks were resampled to 120 s, ensuring uniformity with time pressure blocks, before collating a database of per subject HbO 2 and HHb values for each condition, operative platform and block. A time window of 120 s with a break delay of 10 s from task onset was selected for this purpose.…”
Section: Methodsmentioning
confidence: 99%
“…The modified Beer-Lambert law was used to convert changes in light intensity into HbO 2 and HHb concentration changes. 11 Data were then processed for statistical analysis using a bespoke analytical framework (ICNNA) 32 and self-paced blocks were resampled to 120 s, ensuring uniformity with time pressure blocks, before collating a database of per subject HbO 2 and HHb values for each condition, operative platform and block. A time window of 120 s with a break delay of 10 s from task onset was selected for this purpose.…”
Section: Methodsmentioning
confidence: 99%
“…Much progress of NIRS and DOT research in human head has been achieved. Accurate modeling of tissue increased the utility of photon migration for a broader range of applications including: cerebral metabolism , cerebral edema , traumatic brain injury , functional neuroimaging . However, the study on photon migration in human heart has not been thoroughly researched yet.…”
Section: Introductionmentioning
confidence: 99%
“…However, since PPI is an evoked activity-based connectivity analysis, we shall constraint graph isolation later to active channels. Thus, for reference, a classical task minus baseline analysis of segregated activity was conducted 13 and the channels found as active here were later used to crop the graphs during validation. Segregational activity was established following a task minus baseline analysis.…”
Section: Resultsmentioning
confidence: 99%
“…Processing consisted of signal decimation to 1 Hz to reduce systemic influence, linear detrending to remove system drift and data integrity checks were carried out in ICNNA v1.1.3. 13 Integrity checks included Haar wavelet-based detection of motion-related artifacts, as well as saturation detection individually at both wavelengths as already described. 14 These automated integrity checks were complemented with visual inspection by one of the researchers and subserved rejection of channels considered to remain affected by artifacts.…”
Section: Methodsmentioning
confidence: 99%