This study introduces a novel process identification method aimed at overcoming the challenge of accurately estimating process models when faced with deterministic disturbances, a common limitation in conventional identification methods. The proposed method tackles the difficult modeling problems due to deterministic disturbances by representing the disturbances as a linear combination of Laguerre polynomials and applies an integral transform with frequency weighting to estimate the process model in a numerically robust and stable manner. By utilizing a least squares approach for parameter estimation, it sidesteps the complexities inherent in iterative optimization processes, thereby ensuring heightened accuracy and robustness from a numerical analysis perspective. Comprehensive simulation results across various process types demonstrate the superior capability of the proposed method in accurately estimating the model parameters, even in the presence of significant deterministic disturbances. Moreover, it shows promising results in providing a reasonably accurate disturbance model despite structural disparities between the actual disturbance and the model. By improving the precision of process models under deterministic disturbances, the proposed method paves the way for developing refined and reliable control strategies, aligning with the evolving demands of modern industries and laying solid groundwork for future research aimed at broadening application across diverse industrial practices.