Improving Abundance Estimates of Spring–Summer Snake River Chinook Salmon for Fisheries Management

Abstract

The Columbia River basin is home to a run of spring–summer Chinook Salmon Oncorhynchus tshawytscha that returns to the Snake River drainage of Idaho, Oregon, and Washington in the Pacific Northwest. Historically, the run was one of the more productive throughout the Columbia River basin. However, Snake River spring–summer Chinook Salmon have experienced declines in abundance due to overfishing, habitat degradation, and dams. Several stocks are listed as threatened under the U.S. Endangered Species Act and are supported by mitigation hatcheries funded by Idaho Power Company, the Lower Snake River Compensation Plan, and the Bonneville Power Administration. To maximize tribal and state harvest of returning hatchery adults, minimize impacts on wild fish, and ensure that enough hatchery fish return to meet broodstock needs, careful fisheries management is required. Since 2008, managers have used hatchery adults, PIT‐tagged as juveniles and detected at Lower Granite Dam, to generate adult abundance estimates. In season, these estimates inform state and tribal harvest shares and ensure that broodstock needs are met. Postseason, they provide smolt‐to‐adult survival and return rates. Since 2012, parentage‐based tagging (PBT) has provided an alternative method to estimate stock‐ and age‐specific returns at Lower Granite Dam, since returning hatchery adults sampled at Lower Granite Dam can be assigned to their parents. We compared stock‐specific abundance estimates between PIT‐ and PBT‐derived methodologies for return years 2016–2019. Across all years, PIT tag estimates accounted for 65% of the PBT‐based estimates at Lower Granite Dam across all age‐groups and release sites combined. This underrepresentation across all groups equated to 49,833 fish that were not accounted for in PIT tag abundance estimates. It is clear that PBT‐based estimates should aide in‐season harvest management and postseason run reconstruction to avoid the known bias of estimates from PIT tags, especially during years of low returns when increased accuracy is critical.

Efficient population representation with more genetic markers increases performance of a steelhead (Oncorhynchus mykiss) genetic stock identification baseline

“…For example, GSI and parentage-based tagging (PBT) have become instrumental in characterizing the abundance, distribution, and life-history characteristics of both natural-and hatchery-origin steelhead (Campbell et al, 2012;Copeland et al, 2017;Coykendall et al, 2022;Hargrove, Camacho, et al, 2021;Steele et al, 2013Steele et al, , 2019.…”

“…As part of ongoing recovery efforts, genetic monitoring plays a critical role in the management of steelhead in both the Snake and Columbia River basins. For example, GSI and parentage‐based tagging (PBT) have become instrumental in characterizing the abundance, distribution, and life‐history characteristics of both natural‐ and hatchery‐origin steelhead (Campbell et al., 2012; Copeland et al., 2017; Coykendall et al., 2022; Hargrove, Camacho, et al., 2021; Steele et al., 2013, 2019).…”