Performance allowance is a form of appreciation given by an agency to its human resources. The Office of the Ministry of Religion of Batu City provides performance allowances to civil servants who work in the agency. Several things that affect the provision of performance allowances, such as grade, deduction, taxable income, income tax, and total tax, are used in this study to produce the total gross performance allowances and total performance allowances received. Based on the data obtained, there are some missing data from the parameters of taxable income, income tax, and total tax. This study aims to predict performance allowance when there is missing data. The method used is Neural Network Backpropagation. This study uses 480 data with split data ratios of 50:50, 60:40, 70:30, and 80:20, with epochs 40,000 and a learning rate 0,9. Four types of models used in this study are distinguished based on the number of hidden layers and epochs used. Model A uses two hidden layers to produce the highest accuracy with a 50:50 data split ratio of 65,16%. Model B uses four hidden layers to produce the highest accuracy with a 50:50 data split ratio of 69,34%. Model C uses six hidden layers to produce the highest accuracy with a 50:50 data split ratio of 68,18%. Model D uses eight hidden layers to produce the highest accuracy with a 50:50 data split ratio of 70,90%.