Research and development efforts for biofuel production are targeted at converting plant biomass into renewable liquid fuels. Major obstacles for biofuel production include lack of biofuel crop domestication, low oil yields from crop plants as well as recalcitrance of lignocellulose to chemical and enzymatic breakdown. Researchers are expanding the genetic and genomic resources available for crop improvement, elucidating lipid metabolism to facilitate manipulation of fatty acid biosynthetic pathways and studying how plant cell walls are synthesized and assembled. This knowledge will be used to produce the next generation of biofuel crops by increasing fatty acid content and by optimizing the hydrolysis of plant cell walls to release fermentable sugars. Introduction Biofuels are commonly defined as fuels derived from renewable biological products and are often regarded as an attractive, 'green' alternative to fossil sources of energy due to their potential contribution to lowering carbon dioxide emissions [1]. Globally, plants produce an estimated 200 billion tones of biomass per year [2] in the form of sugars, polysaccharides, oils and other biopolymers, representing an unprecedented resource for biofuel production. However, despite its abundance and potential environmental benefits, the efficient and sustainable use of plant biomass for energy purposes remains a challenging endeavor, requiring major investments in science and technology [3,4].With the exception of sugar cane ethanol, biofuels are a nascent industry in many parts of the world. A few of the commercialized products include bioethanol derived from corn starch and biodiesel obtained from plants with a high content in fatty acids such as soybean, canola and sunflower ( Figure 1). However, the status of corn and soybean as major food crops, coupled to the fact that yields of starch and plant oil are too modest to cover the huge demand of transportation fuels has prompted the development of alternative biofuel production based on lignocellulosic biomass [4][5][6]. Lignocellulose, composed of the polysaccharides cellulose and hemicellulose, and lignin, a phenolic polymer, is the most abundant biomaterial on earth [2,7]. Most lignocellulosic feedstocks in consideration are perennial, non-food grasses such as switchgrass and Miscanthus, as well as woody plants such as poplar (Table 1).None of the current and potential crops has been domesticated or bred for improved polysaccharide or oil extraction for biofuel production. For this reason, biofuel research is focused towards understanding the plant biomass characteristics and traits that need to be modified to optimize crops for biofuel production. The wealth of genetic and genomic resources in model plants such as rice, Arabidopsis and Brachypodium are being used to answer fundamental scientific questions that cannot be addressed directly using potential biofuel crops. This review will discuss the recent advances in understanding lignocellulosic biomass recalcitrance and lipid metabolism for increasing oi...