Chitinases are a group of enzymes capable of hydrolysing the b-(1,4)-glycosidic bonds of chitin, an essential component of the fungal cell wall, the shells of nematode eggs, and arthropod exoskeletons. Chitinases from pathogenic fungi have been shown to be putative virulence factors, and can play important roles in infecting hosts. However, very limited information is available on the structure of chitinases from nematophagous fungi. Here, we present the 1.8 Å resolution of the first structure of a Family 18 chitinase from this group of fungi, that of Clonostachys rosea CrChi1, and the 1.6 Å resolution of CrChi1 in complex with a potent inhibitor, caffeine. Like other Family 18 chitinases, CrChi1 has the DXDXE motif at the end of strand b5, with Glu174 as the catalytic residue in the middle of the open end of the (b/a) 8 barrel. Two caffeine molecules were shown to bind to CrChi1 in subsites "1 to +1 in the substrate-binding domain. Moreover, sitedirected mutagenesis of the amino acid residues forming hydrogen bonds with caffeine molecules suggests that these residues are important for substrate binding and the hydrolytic process. Our results provide a foundation for elucidating the catalytic mechanism of chitinases from nematophagous fungi and for improving the pathogenicity of nematophagous fungi against agricultural pest hosts.
INTRODUCTIONChitin, a polymer of b-(1,4)-linked N-acetylglucosamine (GlcNAc), is an essential structural component of fungal cell walls, the shells of nematode eggs, and the exoskeletons of arthropods. Family 18 chitinases (CAZY GH 18), which degrade this polymer, play key roles in the life cycles of pathogenic fungi (Lorito et al., 1996). Fungi can produce chitinases throughout their growth cycle, and these enzymes are believed to contribute to morphogenetic and pathogenic processes, including spore germination, hyphal branching and mycoparasitic interaction (Gooday et al., 1992;Kuranda & Robbins, 1991;Seidl et al., 2005). For many pathogenic fungi, their chitinases are important virulence factors and promising antifungal targets.Structural studies of chitinase-inhibitor complexes have provided crucial information on the modes of binding, the specificity of chitinase inhibitors, and the mechanism of the hydrolysis reaction (Terwisscha van Scheltinga et al., 1995; van Aalten et al., 2001). Several chitinase inhibitors have been identified, including allosamidin (Bortone et al., 2002), the cyclic pentapeptides argifin and argadin (Arai et al., 2000;Omura et al., 2000), and 8-chlorotheophylline, kinetin and acetazolamide (Hurtado-Guerrero & van Aalten, 2007 (Rao et al., 2005a, b). These xanthine derivatives have low molecular masses and are commercially available. These properties suggest that they might be ideal for developing specific inhibitors of Family 18 chitinases. In addition, site-directed mutagenesis provides a tool for studying the function of amino acid residues and domains. For example, substitution of loop 2 residue N372 with Ala or Gly in d-endotoxin increased the toxicit...