Abstract. Charge density wave (CDW) ordering in the prototypical low-dimensional compound NbSe 3 is reconsidered. We show that the widely accepted CDW model with two incommensurate modulations, q 1 = (0,0.241,0) and q 2 = (0.5,0.260,0.5), localized on type-III and type-I bi-capped trigonal prismatic (BCTP) columns, does not explain some details, revealed by various microscopic methods. The suggested alternative explanation is in a better accord with the entire experimental evidence, including low-temperature (LT) scanning tunneling microscopy (STM) results. It is based on the existence of modulated layered nano-domains formed below both CDW onset temperatures. According to this model, two of the three slightly different BCTP types of columns are modulated by the same wave vector, either q 1 or q 2 , which can easily switch over in a domain as a whole. This approach explains the presence of the q 2 modulation in the STM images recorded above the T 2 CDW transition and the absence of the q 2 satellites in the corresponding diffraction patterns. The long periodic modulation, detected by LT STM is attributed to a beating between the two CDWs, centered on adjacent columns of the same type. These pairs of columns, both either of type-III or type-I, modulated by the two alternative CDWs, represent the basic modulation units, ordered into nano-domains.