In silico annotation of discriminative markers of three Zanthoxylum species using molecular network derived annotation propagation

Lee, Jiho; Silva, Ricardo R. da; Jang, Hyeon Seok; Kim, Hyun Woo; Kwon, Yong Soo; Kim, Junghwan; Yang, Heejung

doi:10.1016/j.foodchem.2019.05.099

Cited by 17 publications

(16 citation statements)

References 28 publications

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“…To determine the chemical composition of SBE, the raw MS/MS data were processed for feature detection and alignment with MS-DIAL software version 4.48 (Blaženović et al, 2017). The detailed settings are listed in Supplementary Table 1, and are adapted from Lee et al (2019). To gain a high confidence in the peak identification, only the features present in both runs from the same sample were considered for alignment correction.…”

Section: Chemical Profiling Of Sunflower Bark Extract Using Uhplc-pda...mentioning

confidence: 99%

Sunflower Bark Extract as a Biostimulant Suppresses Reactive Oxygen Species in Salt-Stressed Arabidopsis

Evon

Ballas³

et al. 2022

Front. Plant Sci.

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A survey of plant-based wastes identified sunflower (Helianthus annuus) bark extract (SBE), produced via twin-screw extrusion, as a potential biostimulant. The addition of SBE to Arabidopsis (Arabidopsis thaliana) seedlings cultured in vitro showed a dose-dependent response, with high concentrations causing severe growth inhibition. However, when priming seeds with SBE, a small but significant increase in leaf area was observed at a dose of 0.5 g of lyophilized powder per liter. This optimal concentration of SBE in the culturing medium alleviated the growth inhibition caused by 100 mM NaCl. The recovery in shoot growth was accompanied by a pronounced increase in photosynthetic pigment levels and a stabilization of osmotic homeostasis. SBE-primed leaf discs also showed a similar protective effect. SBE mitigated salt stress by reducing the production of reactive oxygen species (ROS) (e.g., hydrogen peroxide) by about 30% and developing more expanded true leaves. This reduction in ROS levels was due to the presence of antioxidative agents in SBE and by activating ROS-eliminating enzymes. Polyphenols, carbohydrates, proteins, and other bioactive compounds detected in SBE may have contributed to the cellular redox homeostasis in salt-stressed plants, thus promoting early leaf development by relieving shoot apical meristem arrest. Sunflower stalks from which SBE is prepared can therefore potentially be valorized as a source to produce biostimulants for improving salt stress tolerance in crops.

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Section: Chemical Profiling Of Sunflower Bark Extract Using Uhplc-pda...mentioning

confidence: 99%

Sunflower Bark Extract as a Biostimulant Suppresses Reactive Oxygen Species in Salt-Stressed Arabidopsis

Evon

Ballas³

et al. 2022

Front. Plant Sci.

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“…Recently, network annotation propagation (NAP) has been introduced as an alternative annotation method, which uses in silico prediction with a re-ranking system to increase annotation accuracy [26]. Although NAP cannot provide the level of confidence required for the exact identification of compounds, it enables a class level of annotation and candidate prioritization of unknown fragmented mass spectrum [27]. Using NAP, the consensus candidates of m/z 383.2025 were characterized to be oxadiazoles, but m/z 303.1402 and 699.3502 were not categorized in silico (Figure 5B).…”

Section: Putative Identification Of Differentially Induced Metabolitesmentioning

confidence: 99%

Application of UPLC-QTOF-MS Based Untargeted Metabolomics in Identification of Metabolites Induced in Pathogen-Infected Rice

Park

Kim

et al. 2021

Plants

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Metabolomics is a useful tool for comparing metabolite changes in plants. Because of its high sensitivity, metabolomics combined with high-resolution mass spectrometry (HR-MS) is the most widely accepted metabolomics tools. In this study, we compared the metabolites of pathogen-infected rice (Oryza sativa) with control rice using an untargeted metabolomics approach. We profiled the mass features of two rice groups using a liquid chromatography quadrupole time-of-flight mass spectrometry (QTOF-MS) system. Twelve of the most differentially induced metabolites in infected rice were selected through multivariate data analysis and identified through a mass spectral database search. The role of these compounds in metabolic pathways was finally investigated using pathway analysis. Our study showed that the most frequently induced secondary metabolites are prostanoids, a subclass of eicosanoids, which are associated with plant defense metabolism against pathogen infection. Herein, we propose a new untargeted metabolomics approach for understanding plant defense system at the metabolic level.

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“…Liquid chromatography-mass spectrometry (LC-MS) is a widely used technique in plant metabolomics. A high sensitivity and strong compatibility with biomolecules make LC-MS suitable for profiling chemical composition from a large quantity of data [25,26]. Metabolomics with multivariate analysis techniques is useful for nontargeted metabolic profiling [27].…”

Section: Introductionmentioning

confidence: 99%

A comparative phytochemical study of nine Lauraceae species by using chemometric data analysis

Park

et al. 2022

PLoS ONE

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The diversity of secondary metabolites of individual plants results from multiple enzymatic processes in planta and various environmental factors, such as temperature, moisture, and soil conditions. Chemical composition analysis of plants can lead to a new method to understand relationship among comparable plants along with biological classification such as genetic and anatomical method. In this study, the chemical diversity of nine different Lauraceae species was investigated, and the plant samples were chemically analyzed and classified. Multivariate analysis methods, such as PLS-DA, were used to select important metabolites distinguishing the nine Lauraceae species. The selected metabolites were identified through preparative LC-MS or MS/MS fragment pattern analysis. In addition, the chemical dendrogram for the nine Lauraceae species was interpreted through molecular network analysis and compared with the genetic dendrogram. This approach enabled us to compare the complete chemical compositions of multiple plant samples to identify relationships among plants.

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In silico annotation of discriminative markers of three Zanthoxylum species using molecular network derived annotation propagation

Cited by 17 publications

References 28 publications

Sunflower Bark Extract as a Biostimulant Suppresses Reactive Oxygen Species in Salt-Stressed Arabidopsis

Sunflower Bark Extract as a Biostimulant Suppresses Reactive Oxygen Species in Salt-Stressed Arabidopsis

Application of UPLC-QTOF-MS Based Untargeted Metabolomics in Identification of Metabolites Induced in Pathogen-Infected Rice

A comparative phytochemical study of nine Lauraceae species by using chemometric data analysis

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