In-Silico Approaches for Molecular Characterization and Structure-Based Functional Annotation of the Matrix Protein from Nipah henipavirus 

Abstract

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A Bioinformatic Approach for Molecular Characterization and Functional Annotation of an Uncharacterized Protein from Vibrio cholerae

“…The amino acid sequence composition, the instability index, the aliphatic index, the GRAVY (the measurement of hydrophobicity or hydrophilicity of a protein), extinction coefficients, and the theoretical isoelectric point (pI) of the EET91795 protein were measured by the ExPaSy's ProtParam program [7,8].…”

Bioinformatics Approaches for Structural and Functional Annotation of an Uncharacterized Protein of Helicobacter pylori

“…The selected protein's amino acid (aa) sequence was obtained with the accession number BAW58640 (version: BAW58640.1) in the FASTA format from the NCBI [9,10].…”

“…The protein HPF63_1454 contains a 451 aa long sequence with the protein that has a molecular weight (MW) of 53125.98 Da. This protein consists of 451 aa, where Leu (56) was the most abundant amino acid, followed by Lys (54), Glu (41), Asp (34), Ile (29), Ser (29), Asn (23), Thr (23), Tyr (21), Ala (20), Phe (18), Val (16), Arg (15), Pro (13), Gln (12), Gly (11), His (11), Met (10), Trp (8), and Cys (7) (Table 1).…”

Computational Approaches for Structure-Based Functional Annotation of an Uncharacterized Conserved Protein of Acinetobacter baumannii

“…A. baumannii is a Gram-negative pathogenic bacterium, and it is a nosocomial pathogen that causes a variety of infections in the skin, bloodstream, and urinary system, as well as high mortality and morbidity rates in humans [1,2]. Immunocompromised people are more likely to contract this bacterium, particularly if they have had a lengthy hospital stay [3].…”