Microbial growth onto HVAC filters was observed in real conditions with possible degradation of the indoor air quality. The filtration performance of marketed antimicrobial filters containing zinc pyrithione was tested under laboratory conditions and compared to that of similar filters with the same classification, F7 (EN779:2002). The filtration performance of the two tested filters during loading with PM10 particles was quantified in an experimental setup with filter pressure drop measurement and particle counting upstream and downstream of the filters. The microbial growth on the new and loaded filters, both contaminated with a microbial airborne consortium composed of two bacteria (Gram-positive and -negative) and fungi, was quantified by colony-forming units after conditioning the filters for a few days under controlled temperature (25 °C) and humidity (50% or 90% relative humidity). The results reveal that there was no degradation of the filtration performance of the filters treated with the antimicrobial agent. The efficiency of the antimicrobial treatment, i.e., the ability to inhibit the growth of microorganisms during the incubation period, was significant with the new filters regarding the fungal growth, but the results demonstrate that the antimicrobial treatment became inefficient with the loaded filters.