The phospholipid molecular species (PMS) in the muscular tissue of the swimming crab (Portunus trituberculatus) are extracted and quantified using aminopropyl coated silica-based solid-phase extraction (SPE) and hydrophilic interaction chromatography-mass spectrometry (HILIC-MS), respectively. Once the lipidomics profile is acquired, the contents of PMS are semiquantitatively determined using linear regression models. It is found that in swimming crab, phosphatidylcholine (PC, 14.30 mg g −1 ) is the most abundant phospholipid class, followed by phosphatidylethanolamine (PE, 8.20 mg g −1 ), phosphatidylinositol (PI, 1.60 mg g −1 ), and phosphatidylserine (PS, 9.83 mg g −1 ). The nutritional eicosapentaenoic acid and/or docosahexaenoic acid structured phospholipids exist in swimming crabs, such as PC 18:0/20:5, PE 18:1/20:5 and 16:0/22:6, PI 18:0/20:5. Besides, plasmalogens are detected, such as PC o-16:0/22:6 and PE o-18:0/20:5. Finally, this method is validated to be efficient and accurate in terms of linearity (correlation coefficients, R 2 0.9976 to 0.9993), sensitivity (limit of detection, LOD, 0.22-0.33 μg mL −1 ), precision (relative standard deviation, RSD intra-day ≤ 4.11%), and recovery (78% to 85%, RSD ≤ 5.79%). In conclusion, swimming crab is rich in health-beneficial phospholipids, such as eicosapentaenoic acid and/or docosahexaenoic acid structured phospholipids and plasmalogens, and the muscular tissue is proved to be of high nutritional value. Practical Applications: The study introduces a potential method for the lipidomics screening of polyunsaturated phospholipid molecular species in food.