We studied 20 Chlamydia pneumoniae isolates obtained from respiratory sites and atheroma tissue of patients from various geographic areas to determine the susceptibilities of these isolates to a new desfluoroquinolone, garenoxacin, and to levofloxacin. In addition, we assessed the cultures with these isolates by PCR for the presence or absence of Mycoplasma sp. DNA. Both the MIC at which 90% of isolates are inhibited (MIC 90 ) and the minimal bactericidal concentration at which 90% of isolates are killed (MBC 90 ) for garenoxacin were 0.06 g/ml, and both the MIC 90 and the MBC 90 for levofloxacin were 2.0 g/ml. The activity of garenoxacin against C. pneumoniae was 32-fold greater than that of levofloxacin. Mycoplasma sp. DNA was detected by PCR in 17 of 20 cultures. Mycoplasma amplicons from five Mycoplasma DNA-positive C. pneumoniae cultures were sequenced and found to represent four Mycoplasma species. Our data demonstrate that C. pneumoniae cultures frequently contain Mycoplasma DNA and that its presence in C. pneumoniae cultures does not appear to affect the susceptibility results for the two fluoroquinolones that we tested.Chlamydia pneumoniae is a common cause of acute respiratory illnesses, including pharyngitis, sinusitis, bronchitis, and pneumonia, in children and adults (10). In addition, chronic C. pneumoniae infection is implicated in diseases such as atherosclerosis and its complications (16). C. pneumoniae respiratory infections are usually treated with a macrolide, an azalide, or tetracycline antimicrobials (11). However, fluoroquinolone antibacterial agents are known to be active against C. pneumoniae in vitro. A small number of fluoroquinolones have been moderately successful (70 to 80% bacterial elimination) for the treatment of culture-proven C. pneumoniae infections in humans (12).Garenoxacin (BMS-284756) is a new des-F(6)-quinolone with excellent activity against common respiratory pathogens (9). We studied the in vitro activities of garenoxacin against 20 C. pneumoniae isolates obtained from both respiratory tract and atheroma tissue sources. In addition, because the presence of Mycoplasma is common in reference C. pneumoniae cultures (13, 18) and is known to affect a variety of cell functions (5, 22), we were concerned about the potential effect of the presence of Mycoplasma in HEp-2 cells on antibiotic susceptibility testing with C. pneumoniae (5,18). Therefore, we tested the original cultures, as well as the amplified preparations of C. pneumoniae used for MIC testing, for the presence of Mycoplasma DNA using PCR targeting the 16S rRNA gene (6, 26). We then identified, using DNA sequencing techniques and comparison of the sequences to those in sequence databases, the species of Mycoplasma present in selected cultures. Eleven isolates were obtained from the University of Washington, Seattle: AR388, AR277, AR231, AR427, LR65, Ka50, Ka66, AC14, AC51, ER115, and AR458. Isolate A03SEG was obtained from the University of Louisville, Louisville, Ky. Aliquots of each isolate were prepared for s...