Monitoring of the susceptibility of Mycoplasma bovis field isolates to antibiotics is important for the appropriate choice of treatment. However, in vitro susceptibility testing of mycoplasmas is technically demanding and time-consuming, especially for clinical isolates, and is rarely performed in mycoplasma diagnostic laboratories. Thus, the development of methods allowing rapid real-time detection of resistant strains of M. bovis in clinical samples is a high priority for successful treatment. In this study, a novel TaqMan singlenucleotide-polymorphism (SNP) real-time PCR assay, which enables the rapid identification of M. bovis strains with different susceptibilities to fluoroquinolones, was developed and evaluated. The TaqMan SNP real-time PCR assay is based on the amplification of a 97-bp fragment of the parC quinolone resistance-determining region (QRDR) and allows the specific detection of four possible genotypes: GAC or GAT (susceptible to fluoroquinolones) and AAC or AAT (resistant to fluoroquinolones). Four TaqMan minor groove binder (MGB) probes identifying 1-base mismatches were designed and applied in a dual-probe assay with two reaction tubes. The TaqMan SNP real-time PCRs developed are highly specific for M. bovis, with a detection limit of 5 fg/l (about 5 M.
bovis genomes). In addition, all four SNP real-time PCR tests have almost the same efficiency (97.7% [GAC], 94% [AAC], 99.99% [GAT], and 98% [AAT]). Taken together, the data suggest that this SNP real-time PCR assay has potential as a routine diagnostic test for the detection of decreased susceptibility of M. bovis to fluoroquinolones.Mycoplasma bovis is an important and emerging cause of bovine respiratory disease (BRD), calf pneumonia, mastitis, arthritis, and otitis media, as well as various less common presentations (11). Clinical disease associated with M. bovis is often chronic, debilitating, and poorly responsive to antimicrobial therapy, resulting in significant economic loss, the full extent of which is sometimes difficult to estimate (5, 11). Moreover, since there is no effective vaccine for M. bovis, use of antibiotics is the main control method for this infection.Fluoroquinolones are broad-spectrum antimicrobials highly effective for the treatment of a variety of clinical and veterinary infections and frequently used for the treatment of M. bovis infection in cattle. Their antibacterial activity is due mainly to inhibition of DNA replication. A major mechanism of fluoroquinolone resistance in prokaryotes (including Mollicutes) involves alterations in the target enzymes DNA gyrase and DNA topoisomerase IV, thereby altering affinity for the drug (2, 8). The mutations associated with resistance have been localized within the quinolone resistance-determining regions (QRDRs) of DNA gyrase subunits GyrA and GyrB and/or topoisomerase IV subunits ParC and ParE.Recently, the QRDRs of these genes in 42 M. bovis clinical isolates exhibiting various levels of susceptibility to fluoroquinolones were characterized (10). The data showed that 10/...