SUMMARYThe molybdenum cofactor is ubiquitous in nature, and the pathway for Moco biosynthesis is conserved in all three domains of life. Recent work has helped to illuminate one of the most enigmatic steps in Moco biosynthesis, that of metal ligation to molybdopterin (the organic component of the cofactor) to form active cofactor. In Escherichia coli, the MoeA protein mediates Mo ligation to molybdopterin while the MogA protein enhances this process in an ATP-dependent manner. The xray crystal structures for both proteins have been previously described as well as two essential MogA residues; Asp49 and Asp82. Here we describe the detailed mutational analysis of the MoeA protein.Variants of conserved residues at the putative active site of MoeA were analyzed for loss of function in two different, previously described assays; one employing moeA − crude extracts, and the other utilizing a defined system. Oddly, no correlation was observed between the observed activity in the two assays. In fact, our results showed a general trend towards an inverse relationship between the activity in each assay. Moco binding studies indicated a strong correlation between a variant's ability to bind Moco and its activity in the purified components assay. Crystal structures of the functionally characterized MoeA variants revealed no major structural changes, indicating that the functional differences observed are not due to disruption of the protein structure. Based upon these results, two different functional areas were assigned to regions at or near the MoeA active site cleft. Keywords molybdopterin; MPT; Moco; molybdenum; MoeA; MogA; gephyrin; Cnx1; cinnamon PDB IDs for the variants: 2NQK (D59N); 2NQM (T100A); 2NQN (T100W); 2NQQ (R137Q); 2NQR (D142N); 2NQS (E188A); 2NQU (E188Q); 2NQV (D228A); 2NRO (K279Q); 2NRP (R350A); and 2NRS (S371W) All molybdenum-containing enzymes with the exception of nitrogenase, utilize a molybdenum cofactor (Moco) 1 consisting of a mononuclear Mo atom coordinated via a cis-dithiolene moiety to the organic molecule molybdopterin (MPT). Moco-containing enzymes function as oxidoreductases in a myriad of reactions in carbon, nitrogen, and sulfur cycles (1). In † This work was supported by National Institutes of Health Grant GM00091 (to KVR) and DK 54835 (to HS). * To whom correspondence should be addressed, Phone: (919) Fax: (919) The X-ray crystal structures of E. coli MoeA has previously been solved, and a putative active site assigned (18,19). To gain a more thorough understanding of the mechanism of MoeAmediated molybdenum ligation, a detailed site-directed mutagenesis study of conserved residues at the putative MoeA active site was undertaken. These variants were analyzed for Moco binding and for loss of function in both the moeA − crude extract assay and the fullydefined system. Results from these experiments were utilized to provide the first picture of the distribution of function across the MoeA 3-D structure.
MATERIALS AND METHODS
Mutagenesis of MoeAUsing the Transformer Site-Directed Mutagenesi...