“…In spite of this limitation, the MSAP method has been successfully applied in a wide range of studies where alterations in cytosine methylation were detected in various crop species (Bednarek et al 2007). The AFLP and the MSAP markers have been used to detect significant genetic and epigenetic changes, respectively in a number of crop species for example potato (Joyce and Cassells, 2002;Dann and Wilson, 2011), Solanum aculeatissimum (Ghimire et al 2012), Triticum aestivum (Meng et al 2012), Gardenia jasminoides (Wu et al 2012), Ungernia victoris (Bublyk et al 2012), Capparis spinosa (Carra et al 2012), Phaseolus ssp. (Abid et al 2011), Nicotiana tabacum (Yang et al 2011), Freesia hybrida (Gao et al 2010), Ocotea catharinensis (Hanai et al 2010), Cymbidium (Chen et al 2009), Vitis spp.…”