Our previous studies using intranasal inoculation of mice with vesicular stomatitis virus (VSV) vaccine vectors showed persistence of vector genomic RNA (gRNA) for at least 60 days in lymph nodes in the absence of detectable infectious virus. Here we show high-level concentration of virus and gRNA in lymph nodes after intramuscular inoculation of mice with attenuated or single-cycle VSV vectors as well as long-term persistence of gRNA in the lymph nodes. To determine if the persistence of gRNA was due to ongoing viral replication, we developed a tagged-primer approach that was critical for detection of VSV mRNA specifically. Our results show that VSV gRNA persists long-term in the lymph nodes while VSV mRNA is present only transiently. Because VSV transcription is required for replication, our results indicate that persistence of gRNA does not result from continuing viral replication. We also performed macrophage depletion studies that are consistent with initial trapping of VSV gRNA largely in lymph node macrophages and subsequent persistence elsewhere in the lymph node.Vesicular stomatitis virus (VSV) is a nonsegmented, negative-strand RNA virus and the prototype of the Rhabdoviridae family. VSV encodes 5 structural proteins: nucleocapsid protein (N), phosphoprotein (P), matrix protein (M), the surface glycoprotein (G), and the RNA-dependent RNA polymerase (L) (19). Live-attenuated vaccine vectors based on VSV have been developed and approved for clinical trials. Attenuated VSV-based vaccine vectors expressing foreign proteins induce potent immune responses and protect against viral and bacterial disease in several animal models, including nonhuman primates (9, 13, 15, 16, 17, 21, 25-27, 29, 30). A live-attenuated VSV-based Ebola virus vaccine vector has also been used in a person following a possible Ebola virus exposure (http://blogs .sciencemag.org/scienceinsider/2009/03/researchers-aro.html).Highly attenuated and single-cycle VSV vectors have been extensively characterized previously in our laboratory and elsewhere (4,17,23,24,26). The highly attenuated live VSV vector VSV-CT1 has a truncation of the VSV G cytoplasmic domain from 29 amino acids to 1 amino acid (32). Compared to recombinant wild-type (rwt) vector (rwtVSV), the CT1 vector grows to approximately 20-fold-lower titers in tissue culture. The single-cycle VSV vector (VSV⌬G) has a deletion of the VSV G gene but can be grown in complementing cells expressing the VSV G protein (33). This virus can infect cells and replicate for a single cycle but does not produce infectious progeny in the absence of complementing VSV G protein.In previous studies, we found that VSV vaccine vector genomic RNA (gRNA) persists in the cervical draining lymph nodes for at least 60 days after intranasal (i.n.) inoculation with rwtVSV and VSV-CT1 vectors, although infectious virus could be recovered for only the first 4 days after inoculation (34).VSV-encoded antigen is also known to persist for at least 6 weeks after acute infection (35). Long-term persistence of live vir...