Small extracellular vesicles (sEVs) are nanosized vesicles enclosed in a lipid membrane released by nearly all cell types. sEVs have been considered as reliable biomarkers for diagnostics and effective carriers. Despite the clear importance of sEV functionality, sEV research faces challenges imposed by the small size and precise imaging of sEVs. Recent advances in live and highâresolution microscopy, combined with efficient labeling strategies, enable us to investigate the composition and behavior of EVs within living organisms. Here, a modified sEVs was generated with a near infrared fluorescence protein mKate2 using a VSVG viral pseudotypingâbased approach for monitoring sEVs. An observed was made that the mKate2âtagged protein can be incorporated into the membranes of sEVs without altering their physical properties. In vivo imaging demonstrates that sEVs labeled with mKate2 exhibit excellent brightness and high photostability, allowing the acquisition of longâterm investigation comparable to those achieved with mCherry labeling. Importantly, the mKate2âtagged sEVs show a low toxicity and exhibit a favorable safety profile. Furthermore, the coâexpression of mKate2 and rabies virus glycoprotein (RVG) peptide on sEVs enables brainâtargeted visualization, suggesting the mKate2 tag does not alter the biodistribution of sEVs. Together, the study presents the mKate2 tag as an efficient tracker for sEVs to monitor tissueâtargeting and biodistribution in vivo.