Purpose External allergens are the main causative factor in the pathogenesis of allergic diseases; however, little is known about internal factors such as the biometrical structure of the eye. We investigated the relationship between refractive error and allergic conjunctivitis in order to reveal possible insights into the pathogenesis in 1015 subjects. Methods The patients were divided into four groups: contact lens wearers with allergic conjunctivitis (n ¼ 73), contact lens wearers without allergic conjunctivitis (n ¼ 59), non-contact lens wearers with allergic conjunctivitis (n ¼ 224), and non-contact lens wearers without allergic conjunctivitis (n ¼ 659). The spherical power, cylindrical power, corneal radius, and minimum and maximum corneal refractive powers were measured in all subjects. Results In the non-contact lens wearers, the spherical equivalent and spherical power were significantly lower in patients with allergic conjunctivitis than in patients without allergic conjunctivitis (À3.0173.83 D vs À1.3673.08 D, Po0.0001, and À2.6473.63 D vs À1.0572.88 D, Po0.0001, respectively), while there was no significant difference in any of the parameters between the contact lens wearers with and without allergic conjunctivitis. Conclusion Refractive error may be a risk factor for allergic conjunctivitis.