INTRODUC TI ON Origin, structure of, and protein coding by the mitochondrial genomeAround 2 to 3 billion years ago, the rise in atmospheric oxygen (i.e., the "Great Oxygen Event") altered the atmospheric conditions on the earth. At this time, the class of α-proteobacteria acquired the ability to use oxygen for energy production (1). Through uptake into and endosymbiosis with a host microorganism, eventually mitochondria developed as novel organelles that are typically found in all eukaryotes today. As the symbiotic relationship matured, the majority of endosymbiont genes transferred into the host nucleus (endosymbiotic gene transfer), whereas mitochondria today still retain control over crucial genes essential for mitochondrial energy production (2).The mitochondrial genome encodes only 37 genes. Among these, 13 code for polypeptides, 2 code for ribosomal RNAs (rRNAs) (12S and 16S), and 22 code for transfer RNAs (tRNAs) necessary for mitochondrial protein synthesis. All mRNAs code for subunits of the multiprotein complexes involved in mitochondrial oxidative phosphorylation. Mitochondrially encoded NADH dehydrogenase (mt-ND1, mt-ND2, mt-ND3, mt-ND4, mt-ND4L, mt-ND5, and mt-ND6) codes for seven out of forty-six polypeptides that compose complex I. Mitochondrially encoded cytochrome b (mt-CYB) is one of 11 polypeptides necessary to form complex III. Mitochondrially encoded cytochrome c oxidase (mt-CO1 , mt-CO2, and mt-CO3), along with 10 other nuclear-coded polypeptides,