The SWI/SNF proteins are ATP-dependent chromatin remodeling enzymes that have been implicated in the regulation of gene expression. Recent studies have shown that members of the SWI/ SNF superfamily can function as tumor suppressor genes. DNA methylation and transcriptional inactivation of the HLTF gene, which is a homologue to the SWI/SNF genes, have been observed in colon cancer. In the present study, we studied the DNA methylation status of the HLTF gene by methylation-specific PCR in 50 gastric carcinoma tissues, and seven gastric carcinoma cell lines and compared the methylation status with the levels of HLTF mRNA expression. DNA methylation of the HLTF gene was found in 25 (50%) of 50 gastric carcinomas, and levels of HLTF mRNA were associated with methylation status of HLTF (P = = = =0.027; MannWhitney U test). No correlations were found between HLTF mRNA levels and DNA methylation and variety of genetic and epigenetic alterations are associated with gastric carcinomas. 1) Alterations in DNA methylation patterns, such as hypermethylation of CpG islands, are common changes observed in human cancers.2) Hypermethylation of CpG islands in promoters is associated with silencing of some tumor suppressor genes.3-5) Methylation and inactivation of various genes have been reported in gastric carcinoma. [6][7][8][9][10][11][12][13][14][15][16][17][18] We have also reported DNA methylation of MGMT, 19) p16 INK4a , CDH1,20) and TSP1.
21)Promoter hypermethylation and inactivation of the Helicaselike transcription factor (HLTF) gene have been reported in human colon cancers.22) HLTF contains a DNA-binding domain, a RING finger domain, and seven helicase domains and is a homologue to SWI/SNF proteins. SWI/SNF proteins are ATP-dependent chromatin remodeling enzymes that have been implicated in regulation of gene expression in yeast and higher eukaryotes. 23,24) Members of the SWI/SNF superfamily are characterized by the presence of DNA-dependent ATPase motifs and use of energy from ATP hydrolysis to alter the position or spacing of nucleosomes. Recent studies have shown strong links between the misregulation of remodelers and cancer. A mutation in the hSNF5/INI1 gene was found to be inactivated frequently in pediatric malignant rhabdoid tumors, 25) meningiomas, 26) and myeloid leukemia. 27) BRG1 inactivation mutations and deletions have been detected in cancer cell lines from prostate, lung, breast, and pancreas, 28) suggesting that members of the SWI/SNF superfamily, such as HLTF, can function as tumor suppressor genes. It was recently reported that DNA methylation of HLTF occurred in a certain proportion of human colon, gastric, and esophageal carcinomas.29) However, associations of HLTF methylation and gene expression as well as histone acetylation were not studied in gastric carcinomas.In the present study, we examined DNA methylation status of the 5′ CpG island of the HLTF gene by methylation-specific polymerase chain reaction (MSP) in 50 primary gastric carcinoma tissues and compared the results with HLTF mRNA leve...