Ribonuclease H or hybridase, the enzyme cleaving the RNA moiety of DNA -RNA hybrids has been extensively purified from rat-liver cytosol by ammonium sulphate precipitation, DEAEcellulose chromatography, Sephadex 0-200 and G-150 superfine gel filtration, isoeIectric focusing, phosphocellulose and hydroxyapatite chromatography. Neither native or denatured DNS, nor single or double-stranded natural or synthetic ribopolynucleotides are degraded by the enzyme. The pH optimum of the reaction is 7.9. Enzyme activity is totally dependent on the divalent cations Mg2+ and Mn2+, Mga+ being optimal for the reaction. The enzyme acts on the hybrid as an endonuclease resulting in end products with a chain length less than 15, having a 5'-phosphate and a free 3'-hydroxyl end group. Synthetic homopolymer hybrids are digeated only if they are composed of purine bases. The enzyme has a molecular weight of 120000-125000 and seems to be composed of two subunits with molecular weights of 85000 and 43000.
MaterialsMale Wistar B R I I rats, weighing 120-18Og obtained commercially were used. Ribonucleoside triphosphates and poly(deoxyribonuc1eotides) were supplied by Boehringer Mannheim GmbH (Mannheim, Germany). 3H-Labelled uridine triphosphate was purchased from New England Nuclear Corporation and 3H-labelled polyribonucleotides from Schwarz/ Mann.Biogel A-1.5 m was obtained from Bio-Rad (Munich), Sephadex products from Pharmacia (Uppsala) and ion-exchange cellulose from Whatman. Hydroxyapatite was prepared according to [lo]. PEI-cellulose sheets were supplied by Schleicher & Schull. Double-stranded 3H-labelled M12 phage RNA and E . coli [3H]DNA were kind donations of Prof. M. Hofschneider (Max-Planck-Institut fur Biochemie, Martinsried) and of Dr Radzak (Hygiene Institut, Marburg), respectively. All other reagents were of analyticaI grade.
SubstratesSynthetic hybrids were prepared by mixing equimolar quantities of a [3H]ribohomopolymer and the respective deoxyhomopolymer (determined by using the appropriate absorption coefficients, see below), in 0.2 M NaC1, 30 mM Tris-HC1 pH 7.9 and then heating the mixtures for 5 min at 45-50 "C. After annealing, the solutions were dialyzed against water and lyophylized to give the sodium salts of the complexes. The lyophylized products were dissolved in 0.1 M Eur. J. Biochem. 43 (1974)