A set of innovative
N
-amino-5-cyano-6-pyridones derivatives was developed and produced using one-pot three-component procedures. The evaluated molecules were examined for their antimicrobial efficacy. Based on the acquired findings, most of the investigated compounds had promising antimicrobial properties. Out of these derivatives of 3-cyanopyridine, compounds
3d
and
3e
exhibited minimum inhibitory concentrations (MIC) of 3.91 µg/mL against
E.coli
. In vitro evaluation of DNA gyrase A displayed that molecule
3d
exhibited promising potency as an inhibitor, with an IC
50
value of 1.68 µg/mL compared to ciprofloxacin (IC
50
= 0.45 µg/mL). Furthermore, it was observed that molecule
3e
exhibited a moderate inhibitory effect, as indicated by its IC
50
value of 3.77 µg/mL. A kinetics study conducted to assess the time required to kill
E. coli
bacteria demonstrated that gentamycin and compounds
3d
and
3e
exhibited bactericidal effects within a time frame of 90–120 min. Based on the ADME predictions, compounds
3d
and
3e
are expected to have favorable oral bioavailability and are unlikely to penetrate the blood-brain barrier. Computational mutagenicity and tumorigenicity studies were conducted on compounds
3d
and
3e
. The molecular docking investigation has conclusively demonstrated the binding of compounds
3d
and
3e
to the target DNA gyrase A enzyme, further reinforcing the existing data.
Supplementary Information
The online version contains supplementary material available at 10.1186/s13065-024-01342-9.