Differences in conformational dynamics between two full-length
monoclonal antibodies have been probed in detail using Fast Photochemical
Oxidation of Proteins (FPOP) followed by proteolysis and LC-ESI-MS/MS
analyses. FPOP uses hydroxyl radical labeling to probe the surface-accessible
regions of proteins and has the advantage that the resulting covalent
modifications are irreversible, thus permitting optimal downstream
analysis. Despite the two monoclonal antibodies (mAbs) differing by
only three amino acids in the heavy chain complementarity determining
regions (CDRs), one mAb, MEDI1912-WFL, has been shown to undergo reversible
self-association at high concentrations and exhibited poor pharmacokinetic
properties in vivo, properties which are markedly improved in the
variant, MEDI1912-STT. Identifying the differences in oxidative labeling
between the two antibodies at residue level revealed long-range effects
which provide a key insight into their conformational differences.
Specifically, the amino acid mutations in the CDR region of the heavy
chain resulted in significantly different labeling patterns at the
interfaces of the CL–CH1 and CH1–CH2 domains, with the nonaggregating variant
undergoing up to four times more labeling in this region than the
aggregation prone variant, thus suggesting a change in the structure
and orientation of the CL–CH1 interface.
The wealth of FPOP and LC-MS data obtained enabled the study of the
LC elution properties of FPOP-oxidized peptides. Some oxidized amino
acids, specifically histidine and lysine, were noted to have unique
effects on the retention time of the peptide, offering the promise
of using such an analysis as an aid to MS/MS in assigning oxidation
sites.