2021
DOI: 10.1021/acs.jpcb.1c04019
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Individual Ion Activity Coefficients in Aqueous Electrolytes from Explicit-Water Molecular Dynamics Simulations

Abstract: We compute individual ion activity coefficients (IIACs) in aqueous NaCl, KCl, NaF, and KF solutions from explicit-water molecular dynamics simulations. Free energy changes are obtained from insertion of single ionsaccompanied by uniform neutralizing backgroundsinto solution by gradually turning on first Lennard-Jones interactions, followed by Coulombic interactions using Ewald electrostatics. Simulations are performed at multiple system sizes, and all results are extrapolated to the thermodynamic limit, thus… Show more

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Cited by 28 publications
(32 citation statements)
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“…To evaluate the solvation behavior of the individual ions (Na + , K + , Cl − , and Br − ) in the solvent phase, the excess chemical potentials μ ion ex of the ions in DIPA were calculated based on the multistate Bennett acceptance ratio estimator (MBAR) [48][49][50]. The coupling parameters for the van der Waals and Coulombic interactions λ vdw/coul = {0.00, 0.05, 0.10, …, 1.0} provided a reasonable overlap matrix [51]; using the convergence test proposed by Klimovich et al [51], 1 ns of equilibration followed by 10 ns of production proved sufficient to obtain accurate estimates of the free energies and reproduce the results of Saravi et al [52] The Alchemical Analysis package [51] was used to obtain the free energy estimates using the MBAR method. Then, in order to maintain consistency with previous work [52][53][54], the total chemical potential was obtained by adding the ideal gas contribution:…”
Section: Simulation Analysesmentioning
confidence: 93%
See 2 more Smart Citations
“…To evaluate the solvation behavior of the individual ions (Na + , K + , Cl − , and Br − ) in the solvent phase, the excess chemical potentials μ ion ex of the ions in DIPA were calculated based on the multistate Bennett acceptance ratio estimator (MBAR) [48][49][50]. The coupling parameters for the van der Waals and Coulombic interactions λ vdw/coul = {0.00, 0.05, 0.10, …, 1.0} provided a reasonable overlap matrix [51]; using the convergence test proposed by Klimovich et al [51], 1 ns of equilibration followed by 10 ns of production proved sufficient to obtain accurate estimates of the free energies and reproduce the results of Saravi et al [52] The Alchemical Analysis package [51] was used to obtain the free energy estimates using the MBAR method. Then, in order to maintain consistency with previous work [52][53][54], the total chemical potential was obtained by adding the ideal gas contribution:…”
Section: Simulation Analysesmentioning
confidence: 93%
“…where P 0 is the standard pressure (1 bar), V is the average volume, k B is the Boltzmann constant, μ i 0 is the standard chemical potential obtained using the NIST-JANAF tables [55], and N is the number of ion pairs, estimated following the approach of Saravi and Panagiotopoulos [52] (i. e., the midpoint value before and after the individual ion insertion).…”
Section: Simulation Analysesmentioning
confidence: 99%
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“…In Figure S12, we have shown the radial distribution function and preferential binding graph for proteinions, ions-water, and protein-water by taking the center of mass as a function of interatomic distance for systems. Further, we calculated the water-ion, water-water, and ion-ion interaction energy to show the efficiency of the chosen force-field [71,72] to capture the interactions at a high salt-concentration regime as depicted in Figure S13. At higher salt concentrations the increment in water-ion and ion-ion interaction restricts their interaction with a protein molecules.…”
Section: Chemphyschemmentioning
confidence: 99%
“…where P 0 is the standard pressure (1 bar), V is the average volume, k B is the Boltzmann constant, μ i 0 is the standard chemical potential obtained using the NIST-JANAF tables [55], and N is the number of ion pairs, estimated following the approach of Saravi and Panagiotopoulos [52] (i. e., the midpoint value before and after the individual ion insertion).…”
Section: Simulation Analysesmentioning
confidence: 99%