Members of the p56 family of mammalian proteins are strongly induced in virus-infected cells and in cells treated with interferons or double-stranded RNA. Previously, we have reported that human p56 inhibits initiation of translation by binding to the "e" subunit of eukaryotic initiation factor 3 (eIF3) and subsequently interfering with the eIF3/eIF2⅐GTP⅐Met-tRNA i (ternary complex) interaction. Here we report that mouse p56 also interferes with eIF3 functions and inhibits translation. However, the murine protein binds to the "c" subunit, not the "e" subunit, of eIF3. Consequently, it has only a marginal effect on eIF3⅐ternary complex interaction. Instead, the major inhibitory effect of mouse p56 is manifested at a different step of translation initiation, namely the binding of eIF4F to the 40 S ribosomal subunit⅐eIF3⅐ternary complex. Thus, mouse and human p56 proteins block different functions of eIF3 by binding to its different subunits.One of the key features of the innate immune response is the induction of numerous cellular genes in response to viral stress. Viral stress conditions in cells are triggered by mechanisms commonly associated with a cell undergoing viral infection, such as the production of double-stranded RNA, the production of interferons, as well as other virus-mediated pathways that have yet to be elucidated. Previous studies from our laboratory have characterized the human viral stress-inducible protein p56, a 56-kDa protein (1). Human p56 (Hup56) has been shown to act as an inhibitor of protein synthesis through its association with the "e" subunit of eukaryotic initiation factor 3 (eIF3 1 ; the e subunit is also known as p48 or Int6) (2, 3). We have shown recently (4) that the inhibitory activity of human p56 occurs at the step of ternary complex stabilization by eIF3, a key step in the initiation pathway for protein synthesis in eukaryotes.Eukaryotic initiation factor 3 is the largest of the 11 or more factors required for the initiation of protein synthesis in eukaryotes. eIF3 is composed of 12 subunits named eIF3a to eIF3l, although the exact stoichiometry and arrangement of the subunits are poorly understood (5). eIF3 has many functions in translation initiation, one of which is to serve as a ribosome dissociation factor by binding to the 40 S ribosomal subunit and preventing its re-association with 60 S subunits (6, 7). eIF3 also plays a role in stabilizing interactions with other components of the initiation pathway such as the ternary complex that consists of eIF2⅐GTP⅐Met-tRNA i as well as stabilizing the formation of the 43 S complex that is formed when the ternary complex joins the 40 S ribosome (8, 9). Finally, eIF3 is also involved in binding to eIF4G of the heterotrimeric eIF4F complex, stabilizing its association with the 43 S complex (10, 11).The p56 family of proteins includes several similar sized proteins in humans (p54, p56, p58, and p60) (12-15) as well as other species including hamster (16), mouse (17), and fish (18). The p56 family members share a structural homology...