suggests possible coinfection of P. olseni and P. honshuensis in Manila clam populations in Korean waters. Accordingly, we first examined the presence of P. olseni and/or P. honshuensis in different populations of Manila clams distributed on the west, south and east coasts of Korea using P. olseni and P. honshuensis specific PCR assays. Materials and Methods Sampling of Manila clams For the analysis, clams of shell length (i.e., longest axis of the shell) 28.2-42.2 mm were randomly collected from 25 sites (n = 250) located on the west, south, and the east coasts (Fig. 1). From each clam, gill leaflet on one side of the gills was excised for Ray's fluid thioglycollate medium assay (RFTM) assay, and the remaining body tissues were freeze-dried, homogenized and stored at-70°C until used for PCR assays. RFTM assay The excised gill tissue was inoculated into 5 mL of FTM supplemented with antibiotics including nystatin (200 unit/mL, Sigma) and chloramphenicol (200 μg/mL, Sigma). The RFTM tubes were kept at room temperature (25°C) for 1 week in the dark. After completion of incubation, the gill tissues were digested in 2 M NaOH (Choi et al., 1989) and the Perkinsus sp. hypnospores were counted using a hemocytometer. Perkinsus infection intensity was finally expressed as the number of Perkinsus cells per gram gill tissue. Perkinsus species-specific PCR assays The total DNAs were extracted from approximately 15 mg of the freeze-dried clam tissue using ATL lysis buffers and proteinase K (DNeasy Blood and Tissue Kit, Qiagen). A total of 250 clams (ten clams from each sampling site) were analyzed in the PCRs targeting the ITS region of the ribosomal RNA gene complex. P. olseni and P. honshuensis-specific primers were designed by identifying variable regions following alignment of various Perkinsus spp. ITS sequences using Clustal W (Thompson et al., 1994). The following sequences from GenBank were included in the alignm e n t : P. chesapeaki: E U