Divergent selection resulted in Merino lines that differ markedly for reproduction. These lines were selected from the same base population from 1986 to 2009. Selection was initially based on maternal ranking values for reproduction in both ewe and ram progeny. The maternal ranking scores were augmented by breeding values from a single-trait repeatability model since 2003. The site and severity of flystrike were recorded for mature breeding ewes in the flock from 2007 to 2009. The following details were captured: animal number, site of the strike (body or breech) and the severity of the strike (1 = mild to 5 = severe). Breech strikes amounted to 92.1% of all strikes and this trend was consistent across years. High-line ewes were less likely (P < 0.05) than low-line ewes to be suffering from breech strike. Ewes that suffered from breech strike during a reference year were more likely to be struck again during subsequent years, when compared with contemporaries not affected by breech strike in the reference year. When breech strike and body strike were assessed in a joint preliminary analysis, it seemed that body strike was generally more severe when diagnosed than breech strike. It was concluded that Merino sheep selected for improved reproduction for >20 years were less likely to be affected by breech strike than contemporaries selected for low reproduction.